Name: Swathik Clarancia P

Email Id:

ade1ea@r.postjobfree.com

Mobile number:

+91-900*******

Academic details:

Post-Graduation : M. Tech. Computational Biology,

Centre for Bioinformatics,

Pondicherry University,

86.7%, 2017.

Graduation : B. Tech. Bioinformatics,

Tamil Nadu Agricultural University,

Agricultural college & Research Institute,

85.1%, 2015.

Higher secondary : Mani Higher Secondary School, PCMB, 87.5%, 2011.

Secondary : Milton Matriculation School, 88.8%, 2009. Technical qualification:

Programming

Languages : C++, Java, Perl, Python, R, and HTML.

RDBMS : SQL Server 2008

GUI Tool : Visual Basic (6.0 & 8.0)

Bioinformatics

Data analysis : NTSYSpc, PLINK, TASSEL,

MAPMAKER

Primer designing : FastPCR

Sequ Sequence analysis : Phylip, MEGA, BLAST, FASTA, ClustalW, T-COFFEE, MEME Suite, Open Babel, Phylip, MEGA, FFP method, Bioconductor

Molecular visualization tools : Rasmol, Pymol, Jmol, Swiss PDB viewer Small molecule structure generation: ChemSketch, ChemDraw, MarvinSketch, ArgusLab

Docking software : GOLD, Discovery Studio, AutoDock Synteny analysis : MCScanx, Circos

Modelling : Modeller

Molecular Dynamics Simualtion : GROMACS

Virtual Screening : Schrodinger (Maestro)

Assembly & annotation tool : CodonCode Aligner, CLC Genomics Workench, SOAPdenovo, Trinity, Velvet, Canu, SPAdes, hybridSPAdes, Current Position:

Working as Senior Research Fellow under DBT project entitled “Isolation, functional characterization and evaluation of water deficit stress tolerance responsive genes from high drought tolerant Erianthus arundinaceus by comparative drought transcriptome analysis”, in ICAR- Sugarcane Breeding Institute, Coimbatore. Personal profile:

Father’s name : D. Peter

Date of birth : 5/9/1993

Age : 26

Nationality : Indian

Marital Status : Single

MIRA, Bowtie 2, BUSCO, QUAST, Circlator, GMcloser, Unicycler, Yass, Mauve, Salmon, cutadapt, Trimmomatic, FastQC, FASTX-Toolkit, NGS QC Toolkit, htSeqTools,GO enrichment analysis, DESeq 2, edgeR, Blast2Go, MAPMAN

Fellowships:

Recipient of Summer Research Fellowship 2014 offered by Indian Academy of Sciences.

Current Projects:

Comparative transcriptomic data analysis of Erianthus arundinaceous and Saccharum hybrid Co 86032 under drought stress.

Genome wide identification, characterization, interaction network and expression analysis of Plant Nuclear Factor (NF-Y) gene family in commercial sugarcane hybrid.

Analysis of Bacterial genomes of Bacillus thuringiensis BT62 and KCK7 Projects:

Under Graduation - In silico approach to identify potential inhibitors for Axl- Gas6 signaling.

Post-Graduation - Genome-wide identification of microsatellites and gene ontology studies in Amaranthus species.

Publications

Peter, Swathik Clarancia, Jayakanthan Mannu, and Premendu P. Mathur.

"In Silico Approach to Identify Potential Inhibitors for Axl-Gas6 Signaling." In Proteome Bioinformatics, pp. 221-229. Humana Press, New York, NY, 2017.

Peter, Swathik Clarancia, Jaspreet Kaur Dhanjal, Vidhi Malik, Navaneethan Radhakrishnan, Mannu Jayakanthan, and Durai Sundar.

"Quantitative Structure-Activity Relationship (QSAR): Modeling Approaches to Biological Applications." (2019): 661-676.

Manoj, Vadakkancherry Mohanan, Pushpanathan Anunanthini, Peter, Clarancia Swathik, Selvarajan Dharshini, Jayanarayanan Ashwin Narayan, Markandan Manickavasagam, Ramalingam Sathishkumar et al.

"Comparative analysis of glyoxalase pathway genes in Erianthus arundinaceus and commercial sugarcane hybrid under salinity and drought conditions." BMC genomics 19, no. 9 (2019): 986.

Peter, Swathik Clarancia, Naveenarani Murugan, Manoj Vadakkancherry Mohanan, Sarath Padmanabhan Thelakat Sasikumar, Dharshini Selvarajan, Ashwin Narayan Jayanarayanan, Suresha G. Shivalingamurthy et al.

"Isolation, characterization and expression analysis of stress responsive plant nuclear transcriptional factor subunit (NF-YB2) from commercial Saccharum hybrid and wild relative Erianthus arundinaceus." 3 Biotech 10, no. 7 (2020): 1-14.

Peter, Swathik Clarancia, Naveenarani Murugan, Valarmathi R, Suresha G. Shivalingamurthy, Hemaprabha Govindakurup, Baksi Ram, C. Appunu.

“Cloning, characterization and expression analysis of Deep Rooting (DRO1) Gene from Erianthus arundinaceus”. Journal of Sugarcane Research

[Accepted].

Papers presented in conference (not published)

P. Swathik Clarancia, M. Naveenarani, J. Ashwin Narayan, S. Dharshini, V.M. Manoj, and C. Appunu (2019, January). Isolation, cloning, characterization of drought responsive EaNF-YB2. Paper presented at the Indian Plant Science Congress 2019 in SRM Institute of Science and Technology, Tamil Nadu.

P. Swathik Clarancia, G. S. Suresha, G. Hemaprabha, and C. Appunu (2019, December). Genome wide identification and characterization of NF-Y gene family in Sugarcane. Paper presented at the National Conference of Plant Physiology on Plant Productivity and Stress Management-2019, Kerala Agricultural University, Kerala.

P. Swathik Clarancia, J. Ashwin Narayan, C. Appunu (2018) In silico characterization of stress responsive ALDH 7B4 from Erianthus arundinceous. Paper presented at the National Conference on Basic and Applied Biological Sciences, in Bharathiar University, Tamil Nadu. Certification:

Certified for the completion of python training offered by the Spoken Tutorial Project, IIT Bombay.

Short course:

Attended short course on “Modelling Complex Biomolecular Systems and process using Molecular Dynamics Simulations” during September 2016. Laboratory skills:

Molecular Cloning

Plant tissue culture and transgenic plant development

Immunodiffusion techniques, ELISA-Antigenic determinant, Marker technologies- RAPD, AFLP, SSR, ISSR, & SNP

Bioinformatics:

Sequence analysis: SSR mining, Gene mining, Gene and Protein structure prediction, Motif prediction, Phylogenetic analysis, Synteny analysis, Genome phylogeny, Molecular docking, Virtual Screening and Molecular dynamics simulations.

Next Generation Sequencing data analysis : Bacterial Genome assembly, gene mining, gene ontology and pathway annotation. Transcriptome aasembly, DGE analysis, and pathway annotation.

Internships :

Summer internship project titled “Data curation for Triple Negative Breast Cancer Database and Docking studies on AXL kinase using GOLD & Argus Address:

13-A, Thenvadal Street-1

Pallivasal back side

Muthuswamy Colony

Selvapuram

Coimbatore-641026

lab”, from May to August 2014 under the supervision of Prof. M. Radhakrishna Pillai, FRCPath, Ph. D, Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram, Kerala.

Summer internship project titled “Genome comparison of Neanderthals and Denisovans”, from May to June 2016 under the supervision of P. Gautam, Professor, Centre for Biotechnology, Anna University, Chennai. Other Information:

Attended a workshop on “Biotechniques and Analytical instruments”, 2010 organized by PG & Research Department, Kongunadu Arts and Science College.

Participated in Bioconcurrenza'12, '13 & '15 events conducted at Tamil Nadu Agricultural University.

Organized Bioconcorrenza '14 in Tamil Nadu Agricultural University.

Attended Workshop on "Big Data Analytics 2014" organized by Sri Ramakrishna Engineering College.

Attended technical Workshop Cybernova '14 and participated in Technical Quiz and Googler events organized by Sri Krishna College of Engineering and Technology, Coimbatore.

Participated in Agricultural Genomics Symposium, 2015 held at Tamil Nadu Agricultural University.

Attended seminar on “Current Trends in Protein Structure and Genome Analysis” 2017 organized by Pondicherry University.

Partcipated in national conference on “Computational Biology” 2017 held at DRDO-BU CLS, Bharathiar University, Coimbatore.

Attended national workshop on “Hadoop Ecosystem and Data Analysis using R (HDAR)” 2017 held at Bannari Amman Insitute of Technology, Erode.

Attended AICTE sponsered National Lvel Two Week Faculty Development Programme on “Data Science and Big Data Analytics” 2017 held at Bannari Amman Insitute of Technology, Erode.

Partcipated in “National Conference on Basic and Applied Biological Sciences” 2018 held at Bharathiar University, Coimbatore.

Partcipated in “Indian Plant Science Congress” 2019 held at SRM Institute of Science and Technology, Kattankulathur.

Partcipated in “National Conference of Plant Physiology” 2019 held at Kerala Agricultural University, Thrissur.

Extracurricular activities:

NSS volunteer in college.

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