Research Associate Ph D

CURRICULUM VITAE

of

A S M WALIULLAH, Ph.D.

Profile:

A S M Waliullah

Post-Doctoral Research Associate (January 1st 2024~current)

Department of Pathology

University of Virginia School of Medicine

415 Lane Rd. P.O. Box. 800904, Charlottesville, VA 22908-0904, USA.

E-mail: ****.*******@*****.***, ******@********.***

Homepage: https://asmwaliullah.wixsite.com/wali

https://sites.google.com/view/trinhlab/team?authuser=0 Personal Details:

Name: A S M Waliullah

Date of Birth: 15th November, 1991

Nationality: Bangladeshi (By Birth)

Marital Status: Married

Blood group: O ve

Contact No: 434-***-****

Research focus:

My current research objective is to understand the epigenetic regulations of acute myeloid leukemia (AML) by noncoding RNAs. The approach involves studying AML using advanced techniques such as biochemistry, molecular and cellular biology, mass spectrometry, imaging techniques. Based on my current research, I am eager to implement my knowledge to explore my potentiality, diverse skills and creativity to do something innovative and invent novel approach or idea through research. Educational Qualifications:

Examination Institution Department

Passing

Year

University Grade & GPA

Doctor of

Philosophy

(Ph.D.) in Medical

Sciences

Hamamatsu University

School of Medicine,

Hamamatsu, Japan

Cellular and

Molecular

anatomy

2022

Hamamatsu

University

School of

Medicine

Passed

Grade &

CGPA: Not

applicable

Master of Science

(M.S.)

Gwangju Institute of

Science & Technology,

Gwangju, South

Korea

Biomedical

Science and

Engineering

2018

Gwangju

Institute of

Science &

Technology

B+(Grade)

CGPA-3.92

Out of 4.5

Bachelor of

Science (B.Sc.)

University of Rajshahi,

Rajshahi, Bangladesh

Biochemistry

& Molecular

Biology

2014

University of

Rajshahi

B+(Grade)

CGPA-3.495

Out of 4.0

Publications: [ : https://orcid.org/0000-0001-6778-379X; : https://www.researchgate.net/profile/Asm-Waliullah ] 1. A.S.M. WALIULLAH, Emilia Korczmar, Satish Tiwari, Barbara Dziegielewska, Bon Q. Trinh. “Oncogenic fusion protein PML-RARa controls RNA and protein regulators of chromatin structure in t(15;17) leukemia”. Cancers (In preparation).

2. Satish Tiwari, A.S.M. WALIULLAH, Barbara Dziegielewska, Bon Q. Trinh. “An integrated PU.1-DNA interactome and Transcriptome Profiling reveals a myeloid-specific transcription factor-enhancer RNA feedback loop. (In preparation).

3. Md. Shoriful Islam, Shingo Ema, Md. Mahamodun Nabi, Md. Muedur Rahman, A.S.M. Waliullah, Jing Yan, Rafia Ferdous, Takumi Sakamoto, Yutaka Takahashi, Akihiko Kato, Tomohito Sato, Tomoaki Kahyo, Mitsutoshi Setou. “Comparative analyses of adsorbed circulating proteins in the PMMA and PES hemodiafilters in patients on predilution online hemodiafiltration”. Plos One, Under review. DOI: 10.1101/2024.02.16.580786

4. Zinat Tamannaa, Takumi Sakamoto, Md. Al Mamun, Soho Oyama, A.S.M. Waliullah, Ariful Islam, Md. Mahamodun Nabi, Shuhei Aramaki, Eisuke Tasaki, Yuki Mitaka, Mamoru Takata, Tomohito Sato, Tomoaki Kahyo, Kenji Matsuura, Mitsutoshi Setou. “DESI-IMS coupled with triple quadrupole mass spectrometry demonstrated the capability of NMN imaging in Shelfordella lateralis tissue.” Medical Mass Spectrometry, Vol. 8, No. 1 (April 19, 2024): 1-9. DOI: 10.24508/mms.2024.06.001 5. Eisuke Tasaki, Yuki Mitaka, Yutaka Takahashi, A.S.M. Waliullah, Zinat Tamannaa, Takumi Sakamoto, Ariful Islam, Masaki Kamiya, Tomohito Sato, Shuhei Aramaki, Kenji Kikushima, Makoto Horikawa, Katsumasa Nakamura, Tomoaki Kahyo, Mamoru Takata, Mitsutoshi Setou, Kenji Matsuura. “The royal food of termites shows king and queen specificity.” Proceedings of the National Academy of Sciences of the United States of America Nexus, Vol. 2, No. 7 (July 4, 2023): pgad222. DOI: 10.1093/pnasnexus/pgad222.

6. Tomoki Ishibashi*, A.S.M. Waliullah*, Shuhei Aramaki, Masaki Kamiya, Tomoaki Kahyo, Katsumasa Nakamura, Eisuke Tasaki, Mamoru Takata, Mitsutoshi Setou, Kenji Matsuura. “Plastic brain structure changes associated with the division of labour and ageing in termites”. Development Growth and Differentiation, (June 25, 2023). DOI: 10.1111/dgd.12873. *These authors have equal contribution. 7. Bin Chen, Md. Mahmudul Hasan, Hengsen Zhang, Qing Zhai, A.S.M. Waliullah, Chi Zhang, Yashuang Ping, Soho Oyama, Mst. Afsana Mimi, Yuna Tomochika, Tomoaki Kahyo, Datai Kaneda, Minoru Yoshida, Mitsutoshi Setou. “UBL3 Interacts with Alpha-synuclein in Cells and the Interaction is Downregulated by the EGFR Pathway Inhibitor Osimertinib”. Biomedicines, Vol. 11, No. 6 (June 10, 2023): 1685. DOI: 10.3390/biomedicines11061685.

8. Shuhei Aramaki, Shogo Tsuge, Ariful Islam, Fumihiro Eto, Takumi Sakamoto, Soho Oyama, Wenxin Li, Chi Zhang, Shinichi Yamaguchi, Daiki Takatsuka, Yuko Hosokawa, A.S.M. Waliullah, Yutaka Takahashi, Kenji Kikushima, Tomohito Sato, Kei Koizumi, Hiroyuki Ogura, Tomoaki Kahyo, Satoshi Baba, Norihiko Shiiya, Haruhiko Sugimura, Katsumasa Nakamura, Mitsutoshi Setou. “Lipidomics-Based Tissue Heterogeneity in Specimens of Luminal Breast Cancer Revealed by Multivariate Analysis of Mass Spectrometry Imaging: A Preliminary Study.” PLoS One, Vol. 18, No. 5 (May 10, 2023): e0283155. DOI: 10.1371/journal.pone.0283155.

9. Hengsen Zhang, Bin Chen, A.S.M. Waliullah, Shuhei Aramaki, Yashuang Ping, Yasuke Takanashi, Chi Zhang, Qing Zhai, Jing Yan, Soho Oyama, Tomoaki Kahyo, Mitsutoshi Setou. “A New Potential Therapeutic Target for Cancer in Ubiquitin-Like Proteins—UBL3”. International Journal of Molecular Sciences, Vol. 24, No. 2 (January 8, 2023): 1231. DOI: 10.3390/ijms24021231 10. Chi Zhang, Lili Xu, Mizuki Endo, Tomoaki Kahyo, Kenji Kikushima, Makoto Horikawa, Makoto Murakami, A.S.M. Waliullah, Md. Mahmudul Hasan, Takumi Sakamoto, Yutaka Takahashi, Shuhei Aramaki, Takeaki Ozawa, Mitsutoshi Setou. “Blue light alters cellular lipidome-Light induced lipidomic changes can be modulated by optogenetically engineered cPLA2α.” Journal of Photochemistry and Photobiology, Vol. 12, (October 27, 2022): 100150. DOI: 10.1016/j.jpap.2022.100150 11. A.S.M. Waliullah, Takumi Sakamoto, Tomoya Uchiyama, Eriko Itai, Eiji Naru, Ken Inomata, Md. Al Mamun, Md. Mahmudul Hasan, Reimu Fukui, Tomohito Sato, Yutaka Takahashi, Tetsuya Honda, Tomoaki Kahyo and Mitsutoshi Setou. “Detection of highly abundant small molecules in the stratum corneum of healthy young women using desorption electrospray ionization-mass spectrometry imaging.” Medical Mass Spectrometry, Vol. 7, No. 1 (October 11, 2022): 26-34. DOI: 10.24508/mms.2023.06.001 12. Md. Mahamodun Nabi, Takumi Sakamoto, Tomohito Sato, Md. Al Mamun, Ariful Islam, A.S.M. Waliullah, Shuhei Aramaki, Md. Mahmudul Hasan, Shingo Ema, Akihiko Kato, Yutaka Takahashi, Tomoaki Kahyo, Mitsutoshi Setou. “A convenient online desalination tube coupled with mass spectrometry for the direct detection of iodinated contrast media in untreated human spent hemodialysates.” PLoS One, Vol. 17, No. 6 (Jun 6, 2022): e0268751. DOI: 10.1371/journal.pone.0268751

13. Chi, Do Huu, Tomioki Kahyo, Ariful Islam, Md. Mahmudul Hasan, A.S.M. Waliullah, Md. Al Mamun, Madoka Nakajima, et al. “NAD+ Levels Are Augmented in Aortic Tissue of ApoE−/− Mice by Dietary Omega-3 Fatty Acids.” Arteriosclerosis, Thrombosis, and Vascular Biology, Vol. 42, No. 4, (February 10, 2022): 395-406. DOI: 10.1161/atvbaha.121.317166 14. Mamun, Md. Al, Ariful Islam, Md. Mahmudul Hasan, A.S.M. Waliullah, Zinat Tamannaa, Do Huu Chi, Tomohito Sato, et al. “The Human Vermilion Surface Contains a Rich Amount of Cholesterol Sulfate Than the Skin.” Journal of Dermatological Science, Vol. 103, No. 3 (September 2021): 143–150. DOI: 10.1016/j.jdermsci.2021.07.008

15. Hasan, Md. Mahmudul, Mst. Afsana Mimi, Md. Al Mamun, Ariful Islam, A.S.M. Waliullah, Md. Mahamodun Nabi, Zinat Tamannaa, Tomoaki Kahyo, and Mitsutoshi Setou. “Mass Spectrometry Imaging for Glycome in the Brain.” Frontiers in Neuroanatomy, Vol. 15 (July 29, 2021): 711955. DOI: 10.3389/fnana.2021.711955

16. Hasan, Md. Mahmudul, Fumihiro Eto, Md. Al Mamun, Shumpei Sato, Ariful Islam, A.S.M. Waliullah, Do Huu Chi, et al. “Desorption Ionization Using Through hole Alumina Membrane Offers Higher Reproducibility Than 2,5 dihydroxybenzoic Acid, a Widely Used Matrix in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Imaging Analysis.” Rapid Communications in Mass Spectrometry, Vol. 35, No. 10 (March 29, 2021): e9076 (March 29, 2021). DOI: 10.1002/rcm.9076 17. Nabi, Md. Mahamodun, Md. Al Mamun, Ariful Islam, Md. Mahmudul Hasan, A.S.M. Waliullah, Zinat Tamannaa, Tomohito Sato, Tomoaki Kahyo, and Mitsutoshi Setou. “Mass Spectrometry in the Lipid Study of Cancer.” Expert Review of Proteomics, Vol. 18, No. 3 (March 4, 2021): 201–219. DOI: 10.1080/14789450.2021.1912602

18. A.S.M. Waliullah. “Feasibility Study on Blood Cell Counting Using Mobile Phone-Based Portable Microscope.” International Journal of Clinical and Biomedical Research, Vol. 4, No. 3 (July 31, 2018): 76–79. DOI: 10.31878/ijcbr.2018.43.16

19. A.S.M. Waliullah. “Application of Mobile-Phone Based Portable Microscopy In Clinical Histopathology: A Feasibility Study.” International Journal of Clinical and Biomedical Research, Vol. 4, No. 2 (April 15, 2018): 16–20. DOI: 10.5455/ijcbr.2018.42.04

Research experiences:

Revealing age-dependent change in brain and nervous system of termite: Accomplished project and submitted manuscript.

Chemical analysis of the special food of long-lived kings and queens in termites: Accomplished project and submitted manuscript.

Revealing age-dependent molecular distribution in human skin: Accomplished project and published article.

Technical skills:

Molecular biology related: Bacteria and cell culture, transformation, transfection, transduction, lentiviral generation, plasmid construction, RNA extraction, PCR, qRT-PCR, agarose gel electrophoresis, SDS-PAGE, western blotting, DNA sequencing, exosome isolation, nanoparticle tracking analysis, transmission electron microscopy, confocal microscopy, immunohistochemistry, micro-computed tomography, cell culture (Primary trigeminal neuron, HEK293, MDA-MB-231, COS7, HL-60, U937, K562, Me-1, Kaumi1, etc.).

Animal handling related: Mice breeding and rearing, cranial window implantation, genotyping, treatment.

Analytical related: UV/Visible spectroscopy, mass spectrometry (LC-MS), mass spectrometry imaging

(MALDI-MSI and DESI-MSI), cryo-sectioning.

Software related: MatLab, LipidSearch, Proteome Discoverer, SYNAPSE VINCENT system (for micro- CT), XCalibur, FlexImaging, SnapGene, HDImaging, ImageJ, Microsoft office, GraphPad Prism, Zemax, Solidworks and 3D printing, Adobe Photoshop. Scientific instrument used:

General instruments: Vacuum Concentrators, Freeze dryer, Microvolume Spectrophotometers, pH meter.

Cellular and molecular biology-associated instruments: QuantStudio™ RT-PCR system, Hemocytometer, Ultracentrifuge, chemiluminescence and bioluminescence imager, Micro-plate reader.

Microscope: Two-photon excitation microscope, Transmission electron microscope, Confocal microscope, bright field and fluorescence microscope.

Mass spectrometer: SolariX XR mass spectrometer (MALDI-MSI), Xevo G2-XS Q-TOF mass spectrometer (DESI-MSI), Synapt G2 HDMS mass spectrometer (LC-MS), Q-Exactive Quadrupole- Orbitrap mass spectrometer (LC-MS), Triple quadrupole mass spectrometer (Xevo-TQ-XS)

Tissue sectioning: Cryostat, Microtome.

Neuroscience-related instruments: Stereotaxic Instruments, patch-clamp instruments, multi- electrode arrays (MEAs).

Other: 3D printer, NanoSight (nanoparticle tracking analyzer). Major courses studied:

1. B.Sc. level: Basic Biochemistry, Bio-organic Chemistry, Biophysical Chemistry, physiology, Botany, Basic statistics, Computer Fundamentals, Molecular Biology, Bio-energetics, Enzymes, Metabolism, Microbiology, Bio-statistics, Cell Biology, Physiology & Neurochemistry, Endocrinology, Protein Technology, Basic Immunology, Clinical Biochemistry, Human Nutrition, Molecular Biology & Genetic Engineering, Advance Metabolism, Bio-techniques, Industrial Biotechnology, Plant Biotechnology, Pharmaceutical Biochemistry, Advance Immunology, Oncology & Virology, Neurochemistry. 2. M.S. Level: Neuroscience technology, Biomedical electrical and mechanical engineering, Optogenetics, Biomedical engineering, Biomedical optics, Clinical neuroscience, Applications of biomedical optical imaging. 3. Ph.D. Level: Medical statistics, Behavioral neuroscience, Topics in leading basic medicine, microscopy and mass spectrometry, Protein study techniques.

Awards and fellowships:

1. Awarded fully funded Japanese Government (MEXT) scholarship (2018-2022) for pursuing Doctoral study at Hamamatsu University School of Medicine, Japan.

2. Awarded fully funded GIST Scholarship (2016-2018) for pursuing Masters study at Gwangju Institute of Science and Technology (GIST), South Korea.

Scientific Society affiliations:

1. Japanese Society for Biomedical Mass Spectrometry. 2. Mass Spectrometry Society of Japan.

3. The Korean Society for Brain and Neural Sciences. Peer Review activity:

Working as an active volunteer peer-reviewer in the following journals- 1. PLOS ONE: http://www.ncbi.nlm.nih.gov/pmc/articles/pmc10337870/ 2. International Journal of molecular sciences: http://www.ncbi.nlm.nih.gov/pmc/articles/pmc10298537/ 3. Journal of Personalized Medicine: https://doi.org/10.3390/jpm14040343 4. Journal of Clinical Medicine: https://doi.org/10.3390/jcm13102846 Professional experiences:

Position Affiliation Period

Postdoctoral Research Associate

University of Virginia School of Medicine,

Virginia, USA

January 2024~Current

Specially Appointed Researcher

Hamamatsu University School of Medicine,

Hamamatsu, Japan

October 2022~December 2023

Research Assistant

Hamamatsu University School of Medicine,

Hamamatsu, Japan

September 2020~February 2022

Teaching Assistant

Hamamatsu University School of Medicine,

Hamamatsu, Japan

September 2019~February 2020

Teaching Assistant

Gwangju Institute of Science & Technology,

Gwangju, Korea

September 2016~August 2018

Language skill:

Languages English Bengali Japanese Korean

Level Business level Native level Intermediate level Intermediate level References:

The arrangement of reference information shall be made as required. Declaration:

I declare that all the information presented here is true, and if required and where applicable, this information can be supported by proper documentation.

11th May 2024

(Signature and Date)

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