Ravindra Kumar

Genomic Lab, Newe Yaar Research Center

Agricultural Research Organization, Israel

Mobile: +972-********* E-Mail: ac2v0i@r.postjobfree.com Skype ID: ravindra.banaudha

To build a career in Research and Development with an organisation of high repute. SNAPSHOT

Currently working as a Visiting Scientist in Agricultural Research Organization, Newe Yaar Research Center, Ramat Yishay, Israel.

Outstanding ability to deal with proteome analysis, sequence analysis (protein as well as nucleic acid both), domain and motif identification, low complexity and disordered region of proteins, post-translational modification, subcellular localization, application of machine-learning tools (SVM, HMM) in biology, analysis of high-throughput NGS data, meta-genomic data, de novo genome assembly, genetic mapping, physical mapping, genome-wide recombination analysis, qtl analysis.

Expertise in Perl, Shell Scripting, HTML, MYSQL and the major operating systems Macintosh and Linux

(Ubuntu, Red Hat, Fedora).

Proficiency in several popular statistical packages as R, SPSS, Sigma Plot, Origin and Excel.

Developed several web-server as well as standalone software.

Inherit strong research, analytical, problem solving and interpersonal communication skills. PROFESSIONAL EXPERIENCE

2016-Present: Visiting Scientist in Agricultural Research Organization, Newe Yaar Research Center, Ramat Yishay, Israel.

Significant Highlights:

Main work area includes: Use machine learning to solve biological problem, algorithm development, Web-based tool creation, data mining, database creation, analysis of NGS data, genome assembly, Physical mapping, Genetic mapping, qtl analysis using rqtl.

Handling different biological software for the data analysis like CD-HIT, Support Vector Machine, Random forest, HMM, Velvet, Meta-velvet, TASSEL, ASMap, JoinMap, NGS Toolkit, MEME/MAST, InterProScan, WEKA, etc.

Preparation of documents and writing of research paper. Publication:

1. Kumar R, Kumari B, Kumar M (2017) Prediction of Mitochondrial Proteins and Their Sub-Mitochondrial Localization Using Pfam-Domain and Support Vector Machine. Mitochondrion (Accepted). 2. Garg A, Kumari B, Kumar R, Kumar M (2017) MiPepBase: A database of experimentally verified peptides involved in molecular mimicry. Frontiers in Microbiology (Accepted). 3. Kumar R, Kumari B, Kumar M. (2017) Prediction of endoplasmic reticulum resident proteins using fragmented amino acid composition and support vector machine. PeerJ5:e3561. 4. Kumar R, Kumari B, Kumar M (2016) PredHSP: Sequence Based Proteome-Wide Heat Shock Protein Prediction and Classification Tool to Unlock the Stress Biology. PLoS ONE 11(5): e0155872. 5. Kumar, R*., Srivastava A*, Kumari B, Kumar M. (2015) Prediction of β-lactamase and its Class by Chou’s Pseudo-amino Acid Composition and Support Vector Machine. Journal of Theoretical Biology 365. 96-103. 6. Kumari B, Kumar R, Kumar M (2015) Low complexity and disordered regions of proteins have different structural and amino acid preferences. Molecular BioSystem 11, 585-594. 7. Kumar R*, Kumari B*, Srivastava A,KumarM (2014) NRfamPred: A proteome-scale two level method for prediction of nuclear receptor proteins and their sub-families. Scientific Reports 4, 6810. 8. Kumar R, Jain S, Kumari B, Kumar M (2014) Protein Sub-Nuclear Localization Prediction Using SVM and Pfam Domain Information. PLoS ONE 9(6): e98345.

9. Kumari B*, Kumar R*, Kumar M (2014) PalmPred: An SVM Based Palmitoylation Prediction Method Using Sequence Profile Information. PLoS ONE 9(2): e89246. 10. Srivastava A*, Kumar R*, Kumar M (2017) Prediction and Classification of β-lactamases using a Three-tier Prediction System. Protein and Peptide Letters (Minor Revision Submitted). 11. Kumari B, Kumar R, Kumar M Identifying residues that determine palmitoylation using association rule mining.

(Minor Revision Submitted).

(*Equal Contribution)

ACADEMIC CREDENTIALS

2010-2016 Ph.D. Biophysics University of Delhi South Campus, New Delhi, India 2008-2010 M.Tech. Biotechnology (2008-2010)

G.B. Pant Engineering College

Uttrakhand Technical University, Uttrakhand, India 2005- 2007 M.Sc. Biotechnology Visva-Bharati University, Santiniketan, West Bengal, India 2001-2004 BSc. Biology

KSSPG College

Dr. RML Awadh University, UP, India

ACCOLADES

Got Agricultural Research Organization International Postdoctoral Fellowship for Postdoctoral Research in Israel for the year 2016-2018.

Got Erasmus Mundus BRAVE International Postdoctoral Fellowship for Postdoctoral Research in UK for the year 2016-2017.

2012-2015: Senior Research Fellowship, University Grant Commission, Govt. of India.

2010-2012: Junior Research Fellowship, University Grant Commission, Govt. of India.

2009: Selected for CSIR-UGC-JRF, conducted by CSIR Govt. of India.

2009: Selected for CSIR-JRF, conducted by CSIR Govt. of India.

2008-2010: Graduate Aptitude Test (GATE) Fellowship from MHRD.

2005-2007: DBT Scholarship from Department of Biotechnology, Government of India

2005: Qualified All India Entrance Examination for M.Sc. in Biotechnology at Department of Biotechnology Government of India.

PERSONAL DOSSIER

Date of Birth : 25 June 1881

Current Address : Agricultural Research Organization, Newe Yaar Center, Ramat Yishay, Israel. Linguistic Abilities : Hindi, English

Mobile : +972-*********

E-Mail : ac2v0i@r.postjobfree.com

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