Software Engineer Development

PHILIP CARL MILLER

**** ****** ******, ********, ** 92024

*.*******@***.*** 760-***-****

EDUCATION:

PhD - University of British Columbia:

Interdisciplinary - Biology/Computer Science

MA - McMaster University

Graduate studies - Yale University

BS - McGill University

EXPERIENCE:

1991 - present UCSD, Instructor: "Pattern Recognition for Bioinformatics"

(2003- ), "Biotech Information Security" (2003), "Advanced

Bioinformatics" (1998-2002) and "Digital Image Processing and

Pattern Recognition"(1987-93) in extension. Postdoctoral

researcher (1991-93), Faculty of Medicine. Investigation of cell

ultrastructure using cryoelectron tomography. Programming and

design in C/C++/UNIX of image enhancement in electron microscopy

for macromolecular and protein structure determination.

Collaborative research on bioinformatics, gene expression and

information management at Molecular Biology Dept, University of

Hawaii.

2010-2011 Senior software engineer, Sony, Inc

Development of backend server and web services for Internet

television. PHP/MYSQL code development for Google/Sony Internet

TV. MYSQL database to provide services for Internet/TV

advertisements. Designed specification for suppliers and web

services for advertising, audits, and interface. Developed web

interface for management of advertisements in JAVASCRIPT.

2008-2009 Web software engineer, Avaak, Inc

Web camera development for security, surveillance and social

networking. C#.NET middleware development, SQL/MYSQL design and

programming and JAVASCRIPT/ACTIONSCRIPT interface coding.

Development of database, SOA web services and interface for

streaming video and social networking. Implemented streaming

video to shared web portal.

2007-2008 Software engineering lead, FairIsaac

Analytics software development in VB.NET, C++, Java. Development and

revision of financial analytic software and high performance

transactional database. Conversion of VB to .NET for workstation

GUI. Responsible for one million line code base in C NET.

2006 Software consultant, Hewlitt-Packard

Database design and development for ink supply chain

management. Developed a database to track international ink

sales to produce time critical MSDS notifications of

toxic chemicals. Design using ORACLE, ACCESS and MYSQL.

2006 Software consultant, Genomics Institute of Novartis

Responsible for the development and maintenance of the proteomics

database for

high-throughput structural biology at the Joint Center for Structural

Genomics. Software development of MYSQL and ACCESS database, VB

and .NET programming and data integration for tracking protein

crystallization.

2005 - 2006 Statistical analysis consultant, Combimatrix, Corp.

Provide statistical analysis for the development of custom gene

arrays for the diagnosis of influenza. Statistical analysis of

probes, hybridization, specificity and accuracy of gene arrays.

Use of multivariate statistics and bioinformatics integration

for the interpretation of DNA arrays. Statistical analysis of

gene arrays for diagnostic testing using SAS/JMP/Python and

Minitab.

2002-2003 Bioinformatics Product Manager, Accelrys Inc.

Management of the GCG bioinformatics software suite with $5

million in world-wide sales. Responsible for product

development, upgrade of scientific algorithms and market

strategy. Coordination and organization of software design,

research and development.

2000-2002 Bioinformatics Consultant, Neurogenetics, Inc.

Development of bioinformatics databases and algorithms for

genomic and proteomic research. Homology searches and

phylogenetic analysis of genetic pathways involved in signal

transduction, focusing on target development in neurological

disease. Software development using Perl/C.

1998-2000 Founder and Director, Bioinformational Technical Services

Business development, marketing and management of a fast growing

biotechnology services company. Grew sales revenue to $3

million. Designed and integrated DNA sequence, functional

genomics, metabolic cycle and proteomics systems. Designed and

implemented systems for whole genome, shotgun sequencing and

functional genomics for multinational collaboration in

agricultural biotechnology. Software development using C/C++.

1996-97 Department Head, Bioinformatics, Chugai Biopharmaceuticals

DNA sequencing, genotyping and gene expression databases built

in Oracle/SQL/ Powerbuilder. Developed intra/intranet

communications for an international, corporate bioinformatics

facility. Recruitment, management and development of corporate

R&D strategy.

1994-95 Senior Computational Scientist, Bioinformatics, Sequana

Therapeutics

Statistical genetics for gene identification through

linkage and association analysis. Lead investigator for

statistical genetics of candidate gene in osteoporosis.

Programming for robotic control, materials handling, and

machine vision using C/C++/SUN/UNIX.

PUBLICATIONS:

M. H. Kumagai and Miller P. 2006 Development of electronic

barcodes for use in plant pathology and functional

genomics. Plant Molecular Biology 2006 61:515-523

Miller P. 2006 BioIT Hardware Configuration in In Silico

Technology in Drug Target Identification and Validation. Darryl

Le n and Scott Markel ed. Decker.

Miller P. 2003 Computational Challenges of Bioinformatics.

AccelrysWorld Annual Conference, Feb. 25, 2003.

Miller P. 1998 Bioinformatics: an international perspective. Lab

Automation '98, San Diego.

Seto D., Hilbush B., Miller P., Hasel C. and G. Sutcliffe 1996.

A method for the analysis of total gene expression. Hilton

Head Conference on Genome Sequencing.

LeDuc C., Miller P., Lichter J. and P. Parry 1995 Batched

Analysis of

Genotypes. PCR Methods and Applications. V 4., N. 6: 331-336.

Zhou L., Miller P., and P. Parry 1995 Direct sequencing of PCR

product

using antisense blocking oligonucleotides and its application

in genome

sequencing. Cold Spring Harbor Genome Mapping and Sequencing

Conference,

May 1995.

Fan G., Young S., Miller P., and M. Ellisman 1995 Conditions

for Electron Tomographic Data Acquisition. Journal of

Electron Microscopy, V.44:15-21.

Miller P. and P. Parry 1995 An association study of the vitamin

D

receptor gene and osteoporosis. Sequana Technical Report #4.

Miller P. 1994 Statistical analysis of high throughput

genotyping.

Sequana Technical Report #1.

PATENTS:

RFID system for material tracking. US Patent Pending 2009, 2010

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