Control Medical

Location:

Atlanta, GA

Posted:

November 09, 2012

Contact this candidate

Resume:

Resume of Allen Tannenbaum

Personal Data

Name: Allen Robert Tannenbaum.

Date and Place of Birth: January 25, 1953, New York City, New York.

Telephone Number: 404-***-****.

Email: *********@*****.***.

Education

1. Columbia University, B.A. in Mathematics, June 1973.

2. Harvard University, Ph.D. in Mathematics, June 1976.

Ph.D. advisor: Professor Heisuke Hironaka, Harvard University.

Thesis title: Deformations of 1-Cycles and the Chow Scheme.

Main Fields of Interest

Medical imaging, image processing, computer vision, systems and control,

controlled active vision, mathematical systems theory, bioinformatics, com-

puter graphics, control of semiconductor fabrication processes, robotics, op-

erator theory, functional analysis, algebraic geometry, di erential geometry,

invariant theory, and partial di erential equations.

Positions Held

1. Interim Departmental Chairperson, ECE, UAB, August 2012-present.

2. Goodrich Professor, Comprehensive Cancer Center/ECE/Radiology,

UAB, January 2012-present.

3. Visiting Professor, Departments of Biomedical and Electrical/Computer

Engineering, Boston University, July 2011-August 2012.

4. Adjunct Professor, School of Mathematics, Georgia Tech, September

2007-present.

5. Adjunct Professor, College of Computing, Georgia Tech, June 2007-

present.

6. Adjunct Professor, Department of Radiology, Emory Medical School,

January 2002-present.

7. Professor, Department of Electrical Engineering, Technion, Israel, March

2005 - September 2010.

8. Julian Hightower Professor, Departments of Electrical/Computer and

Biomedical Engineering, Georgia Tech, Atlanta, Georgia, August 1999

- June 2011. Now Adjunct Professor of ECE.

9. Professor, Department of Electrical Engineering, Technion, Israel, Oc-

tober 1989 - October 1992.

10. Professor, Department of Electrical and Computer Engineering, Uni-

versity of Minnesota, Minneapolis, Minnesota, September 1986 - Febru-

ary 2002.

11. Visiting Professor, Department of Electrical Engineering, McGill Uni-

versity, Montreal, Canada, August 1985 - August 1986.

12. Associate Professor, Department of Mathematics, Ben-Gurion Univer-

sity of the Negev, Beer Sheva, Israel, September 1984 - August 1986.

13. Associate Professor, Center for Mathematical System Theory, De-

partment of Mathematics, University of Florida, Gainesville, Florida,

U.S.A., August 1982 - August 1984.

14. Senior Scientist, Department of Mathematics, Weizmann Institute of

Science, Rehovot, Israel, October 1980 - August 1983.

15. Research Mathematician, Forschungsinstitut f r Mathematik, E.T.H.,

Z rich, Switzerland, October 1978 - October 1980.

16. Visiting Researcher, Institut des Hautes Etudes Scienti ques, Bures-

sur-Yvette, France, January 1978 - May 1978.

17. Assistant Professor, Department of Mathematics, Weizmann Institute

of Science, Rehovot, Israel, September 1976 - September 1978.

18. Research Assistant, Department of Mathematics, Harvard, September

1973 - June 1976.

Courses Taught

1. Calculus (both elementary and advanced). Undergraduate

2. Di erential Equations. Undergraduate

3. Algebraic Geometry. Graduate

4. Functions of One Complex Variable. Graduate

5. Several Complex Variables. Graduate

6. Lie Groups and Lie Algebras. Graduate

7. Commutative Algebra. Graduate

8. Digital Control. Graduate

9. Feedback and Control Theory. Undergraduate

10. State Space Methods in Control. Senior undergraduate/First year

graduate

11. Optimal Control. Graduate

12. Robust Control. Graduate: I created this course.

13. Discrete Mathematics (for computer science). Undergraduate

14. Signals and Systems. Undergraduate

15. Image Processing. Senior undergraduate/First year graduate

16. Computer Vision. Graduate. I created this course in computational

computer vision.

17. Computer Engineering. Basic computer engineering course at Georgia

Tech. It is course number ECE 2030.

18. Medical Imaging. Graduate. I created this course.

Recent Professional Activities

1. Director MINERVA Lab for Medical Imaging, Georgia Tech.

2. Co-Director of the Center for Control and Dynamical Systems (Uni-

versity of Minnesota), 1990-1995.

3. Technical consultant for Honeywell, Storagetek, 3M Corporation, GE

Medical Systems, Polaris, UTRC, Siemens, Science Partners, Trex En-

terprises, tOSC, MZA, Tempest Tech, and Mayo Clinic.

4. Former associate editor of Systems and Control Letters, International

Journal of Robust and Nonlinear Control, and SIAM Journal of Con-

trol and Optimization. Editorial board of SIAM Journal on Imaging

Science and SIAM Book Series on Control and Dynamical Systems.

5. Reviewer for Mathematical Reviews and Zentralblatt f r Mathematik.

6. Have given numerous invited lectures at universities, conferences, and

companies in Argentina, Australia, Belgium, Brazil, Britain, Canada,

China, France, Germany, Greece, Holland, India, Israel, Italy, Japan,

Norway, Poland, Portugal, Russia, Singapore, Spain, Sweden, Switzer-

land, Uruguay, and the United States.

7. Co-organizer (with Professors David Mumford, Peter Olver, and Dr.

Guillermo Sapiro) of workshop on computer vision held at Geometry

Center of University of Minnesota in 1995.

8. On organizing committee for US-China Control Conference held in

1997.

9. Co-organizer (with Prof. Tryphon Georgiou) of AFOSR Contractors

Meeting held in Minneapolis in 1995.

10. On the organizing committee of the 1996 and 1997 SPIE Conferences

in San Diego.

11. Member of SIAM Reid Prize Committee 1996-1999.

12. Guest editor (with J. Morel and G. Sapiro) of special issue of IEEE

Trans. on Image Processing on partial di erential equation methods.

13. Have supervised or co-supervised 12 postdoctoral researchers, 39 doc-

toral, and 19 masters students.

14. Organizing committee for MBI (Ohio State) program in biomedial

imaging in 2014.

15. Organizing committee for IMA (University of Minnesota) year in con-

trol in 2014.

16. Organizing committee for MSRI (Berkeley) workshop on Fluid me-

chanics, Hamiltonian dynamics, and Numerical Aspects of Optimal

Transportation in 2013.

17. NSF and NIH review panels.

18. Reviewer for ARO and AFOSR proposals.

19. Referee for numerous mathematics and engineering journals including

IEEE PAMI, IEEE Trans. Image Processing, IEEE Aut. Control, Int.

Journal of Computer Vision, Pattern Recognition, IEEE Trans. Med-

ical Imaging, Journal of AMS, Transactions of AMS, SIAM Control

and Optimization.

20. Program Committees for CDC, CVPR, MICCAI, SPIE, ICCV.

21. Consultant for Neuroscience and Alcoholism for the NIAAA. This is

completely new program for NIH in which we are looking for more

daring DARPA-like projects.

Awards and Honors

1. Phi beta kappa.

2. Graduated summa cum laude from Columbia University.

3. Kennedy Research Prize.

4. NSF Research Initiation Award.

5. Fellow Award, Japanese Mathematical Society.

6. Plenary Speaker at International Conference on Partial Di erential

Equations and Distributed Control (1991).

7. Principal Lecturer for the CRM (University of Montreal) Summer

School in Optimization and Control (1992).

8. Keynote Speaker at American Mathematical Society Annual Meeting

(1994).

9. Plenary Speaker at American Mathematical Society Meeting (1997).

10. George Taylor Research Award (University of Minnesota).

11. Plenary Speaker for SIAM Conference on Control (1998).

12. Plenary Speaker for AFOSR Conference on Optimal Design and Con-

trol (1997).

13. Takeda Best Paper Award for New solution to the two block H

problem for in nite dimensional stable plants (K. Hirata, Y. Ya-

mamoto, T. Katayama, A. Tannenbaum), Trans. of the Society of

Instrument and Control Engineers 32 (1996), pp. 1416 1424.

14. Plenary Speaker for IEEE Conference on Decision and Control, De-

cember 2000.

15. Best Paper Award for FOAM 2000 Conference from Society of Plastics

Engineers for New algorithms for 3D analysis of open-celled foams,

(M. Montminy, C. Macosko, and A. Tannenbaum).

16. Keynote Speaker at MTNS 2002.

17. IEEE Fellow.

18. Zaborszky Lecturer, Washington University, 2003.

19. Best Paper Award, MICCAI 2006 for Shape-driven surface segmen-

tation using spherical wavelets (D. Nain, S. Haker, A. Bobick, and

A. Tannenbaum).

20. Best Paper Award (O. Hugo Schuck Award), ACC 2007 for Track-

ing deformable objects with unscented Kalman ltering and geometric

active contours (S. Dambreville, Y. Rathi, Allen Tannenbaum).

21. Plenary Speaker for SciCADE 07, July 2007.

22. Hurwitz Lecturer, ETH, Zurich, 2010.

23. Plenary Speaker for MTNS, 2012.

LIST OF PUBLICATIONS

1. Degenerations of curves in P3, Proc. Am. Math. Soc. 65 (1978),

6-10.

2. Irreducible components of the Chow Scheme of space curves, Math.

Zeitschrift 162 (1978), 287-294.

3. On the geometric genera of projective curves, Math. Annalen 240

(1979), 213-221.

4. Deformations of space curves, Archiv der Mathematik 34 (1980),

37-42.

5. Families of algebraic curves with nodes, Compositio Mathematica

41 (1980), 107-126.

6. Feedback stabilization of linear dynamical plants with uncertainty in

the gain factor, International Journal of Control 32 (1980), 1-16.

7. Castelnuovo curves and unobstructed deformations, Math. Zeitschrift

174 (1980), 141-147.

8. Families of curves with nodes on K-3 surfaces, Math. Annalen 280

(1982), 239-253.

9. On the stabilizer subgroup of a pair of matrices, Linear Algebra and

its Applications (Special Issue on Linear Control Theory) 50 (1983),

527-544.

10. Modi ed Nevanlinna-Pick interpolation and stabilization of linear

plants with uncertainty in the gain factor, International Journal of

Control 36 (1982), 331-336.

11. On pole assignability over polynomial rings, Systems and Control

Letters 2 (1982), 13-16.

12. A note on linear systems on K-3 surfaces, Proc. Am. Math. Soc.

86 (1982), 6-9.

13. On the classicial characteristic linear series of plane curves with nodes

and cuspidal points: two examples of Beniamino Segre, Compositio

Mathematica 51 (1984), 169-183.

14. Polynomial rings over arbitrary elds in two or more variables are

not pole assignable, Systems and Control Letters 2 (1982), 222-226.

15. Linear systems on curves, Bulletin of the Canadian Math. Soc. 27

(1984), 371-375.

16. Pointwise stability and feedback control of linear systems with non-

commensurate delays (with E. W. Kamen and P. P. Khargonekar),

Acta Math. 2 (1984), 159-184.

17. On a certain class of real algebras which are projective-free, Archiv

der Mathematik 42 (1984), 474-478.

18. Stabilization of time-delay systems using nite-dimensional compen-

sators (with E. W. Kamen and P. P. Khargonekar), IEEE Trans. on

Aut. Control AC-30, January 1985, 74-78.

19. Noneuclidean metrics and the robust stabilization of systems with

parameter uncertainty (with P. P. Khargonekar), IEEE Trans. on

Aut. Control AC-30, October 1985, 1005-1013.

20. Robust control of linear time-invariant plants using periodic compen-

sation (with P. P. Khargonekar and K. Poolla), IEEE Trans. on Aut.

Control AC-30, November 1985, 1088-1096.

21. Stable Bezout factorizations and feedback control of time-delay sys-

tems, (with E. W. Kamen and P. P. Khargonekar), International

Journal of Control 43 (1986), 837-857.

22. On the multivariable gain margin problem, Automatica 22 (1986),

381-384.

23. On the sensitivity minimization problem for linear time-varying peri-

odic systems (with A. Feintuch and P. P. Khargonekar), SIAM Jour-

nal on Control and Optimization 24 (1986), 1076-1085.

24. Gain optimization for distributed systems (with A. Feintuch), Sys-

tems and Control Letters 6 (1986), 295-301.

25. Robotic manipulators and the geometry of real semi-algebraic sets

(with Y. Yomdin), IEEE Journal of Robotics and Automation RA-3

(1987), 301-308.

26. Weighted sensitivity minimization for delay systems (with C. Foias

and G. Zames), IEEE Trans. on Automatic Control AC-31 August

1986, 763-766.

27. On the H -optimal sensitivity problem for systems with delays

(with C. Foias and G. Zames), SIAM Journal on Control and Op-

timization 25 (1987), 686-706.

28. On decoupling the H -optimal sensitivity problem for products of

plants (with C. Foias and G. Zames), Systems and Control Letters 7

(1986), 239-246.

29. On the Nehari problem for a certain class of L -functions appearing

in control theory (with C. Foias), Journal of Functional Analysis 74

(1987), 146-159.

30. Sensitivity minimization for arbitrary SISO distributed plants (with

C. Foias and G. Zames), Systems and Control Letters 8 (1987), 189-

195.

31. On the uniqueness of a minimal norm representative of an operator in

the commutant of the compressed shift (with C. Foias), Proceedings

of the American Mathematical Society 101 (1987), 687-692.

32. On a local nonlinear commutant lifting theorem (with J. Ball, C.

Foias, J. W. Helton), Indiana Univ. Journal of Mathematics 36 (1987),

693-709.

33. On the Nehari problem for a certain class of L -functions appear-

ing in control, II (with C. Foias), Journal of Functional Analysis 81

(1988), 207-218.

34. Weighted sensitivity minimization: general plants in H and rational

weights (with T. Lypchuk and M. Smith), Linear Algebra and its

Applications 109 (1988), 71-90.

35. Optimal sensitivity theory for multivariate distributed plants (with

C. Foias), International Journal of Control 47 (1988), 985-992.

36. Generalized interpolation theory in control (with B. Francis), Math-

ematical Intelligencer 10 (1988), 48-53.

37. On skew Toeplitz operators, I (with H. Bercovici and C. Foias),

Operator Theory: Advances and Applications 29 (1988), 21-45.

38. A Poincar -Dulac approach to a nonlinear Beurling-Lax-Halmos the-

orem (with J. Ball, C. Foias, and J. W. Helton), Journal of Math.

Analysis and Applications 139 (1989), 496-514.

39. Some explicit formulae for the singular values of certain Hankel oper-

ators with factorizable symbol (with C. Foias and G. Zames), SIAM

J. Mathematical Analysis 19 (1988), 1081-1091.

40. On the four block problem, I, (with C. Foias), Operator Theory:

Advances and Applications 32 (1988), 93-112.

41. Iterated commutant lifting for systems with rational symbol (with

C. Foias), Operator Theory: Advances and Applications 41 (1989),

255-277.

42. On the parametrization of the suboptimal solutions in generalized

interpolation (with C. Foias), Linear Algebra and its Applications

124 (1989), 145-164.

43. On the four block problem, II: the singular system (with C. Foias),

Integral Equations and Operator Theory 11 (1988), 726-767.

44. Weighted sensitivity optimization for nonlinear systems (with C.

Foias), SIAM Journal on Control and Optimization 27 (1989), 842-

860.

45. Some remarks on optimal interpolation (with C. Foias), Systems and

Control Letters 11 (1988), 259-264.

46. Skew Toeplitz approach to the H -control of multivariate distributed

systems (with H. Ozbay), SIAM J. Control and Optimization 28

(1990), 653-670.

47. A strong Parrot theorem (with C. Foias), Proceedings of the Amer-

ican Mathematical Society 106 (1989), 777-784.

48. Control of slowly time-varying linear systems (with E. Kamen and P.

Khargonekar), IEEE Transactions Automatic Control AC-34 (1989),

1283-1286.

49. Four block problem : stable weights and rational weightings (with

P. Khargonekar and H. Ozbay), International Journal of Control 50

(1989), 1013-1023.

50. On the structure of suboptimal H controllers in the sensitivity min-

imization for distributed stable plants (with H. Ozbay), Automatica

27 (1991), 293-305.

51. A spectral commutant lifting theorem (with H. Bercovici and C.

Foias), Transactions of the AMS 325 (1991), 741-763.

52. On certain minimal entropy extensions appearing in dilation theory

(with C. Foias and A. Frazho), Linear Algebra and Its Applications

137 (1990), 213-238.

53. On spectral tangential Nevanlinna-Pick interpolation (with H. Bercovici

and C. Foias), Journal of Math. Analysis and Applications 155 (1991),

156-176.

54. The invariant subspaces of a uniform Jordan operator (with H.

Bercovici), Journal Math. Analysis and Applications 156 (1991), 220-

230.

55. Frequency domain analysis and robust control design for an ideal ex-

ible beam (with K. Lenz, H. Ozbay, J. Turi, B. Morton), Automatica

27 (1991), 947-961.

56. Mixed sensitivity optimization for unstable in nite dimensional sys-

tems (with H. Ozbay and M. Smith), Linear Algebra and Its Appli-

cations 178 (1993), 43-83.

57. On the evolution of curves via a function of curvature, I: the classical

case (with B. Kimia and S. Zucker), Journal of Math. Analysis and

Applications 163 (1992), 438-458.

58. Structured interpolation theory (with H. Bercovici and C. Foias),

Operator Theory: Advances and Applications 47 (1990), 195-220.

59. On the optimal solutions in spectral commutant lifting theory (with

H. Bercovici and C. Foias), Journal of Functional Analysis 101 (1991),

38-49.

60. On a causal linear optimization theorem (with C. Foias and C. Gu),

Journal of Math. Analysis and Applications 182 (1994), pp. 555 565.

61. Abstract model and controller design for an unstable aircraft, (with

D. Enns and H. Ozbay), AIAA Journal on Guidance, Control, and

Dynamics 15 (1992), 498-508.

62. Some mathematical problems in computer vision (with A. Bruck-

stein), Acta Math. Appl. 30 (1993).

63. Causality in commutant lifting theory (with C. Foias), Journal of

Functonal Analysis 118 (1993), 407 441.

64. A lifting technique for linear periodic systems with applications to

sampled-data control (with B. Bamieh, B. Francis, J. B. Pearson),

Systems and Control Letters 17 (1991), 79-88.

65. On combined H H 2 suboptimal interpolants (with C. Foias and

A. Frazho), Linear Algebra and Its Applications 203-204 (1994), pp.

443 469.

66. On a ne plane curve evolution (with G. Sapiro), Journal of Func-

tional Analysis 119 (1994), pp. 79 120.

67. Intertwining dilations, intertwining extensions, and causality (with

C. Foias and C. Gu), Acta Sci. Math. (Szeged) 56 (1993), pp. 101

123.

68. Nonlinear H optimization: a causal power series approach, SIAM

J. Control and Optimization 33 (1995), pp. 185 207.

69. Nonlinearity in H theory, causality in commutant lifting theory,

and extension of intertwining operators (with C. Foias and C. Gu),

Integral Equations and Operator Theory 23 (1995), 89-100.

70. Shapes, shocks, and deformations, I: the components of shape and the

reaction-di usion space (with B. Kimia and S. Zucker), International

Journal of Computer Vision 15 (1995), 189-224.

71. A ne invariant scale-space (with G. Sapiro), International Journal

of Computer Vision 11 (1993), 25-44.

72. On invariant curve evolution and image analysis (with G. Sapiro),

Indiana Univ. Journal of Mathematics 42 (1993), 985-1009.

73. A relative Toeplitz-Hausdor theorem (with H. Bercovici and C.

Foias), Operator Theory: Advances and Applications 71 (1994), pp.

29 34.

74. Continuity of the spectrum on closed similarity orbits (with H.

Bercovici and C. Foias), Integral Equations and Operator Theory 18

(1994), 242 246.

75. On area and length preserving geometric invariant curve evolutions

(with G. Sapiro), IEEE Trans. on Pattern Analysis and Machine

Inteligence 17 (1995), pp. 67 72.

76. Stability margin optimization via interpolation and conformal map-

pings (with J. Cockburn and Y. Sidar), IEEE Trans. Aut. Control

40 (1995), pp. 1066 1070.

77. On a lifting theorem for the structured singular value (with H.

Bercovici, C. Foias, and P. Khargonekar), Journal of Math. Analy-

sis and Applications 187 (1994), pp. 617 627.

78. Classi cation and uniqueness of invariant geometric ows (with P.

Olver and G. Sapiro), Comptes Rendus Acad. Sci. (Paris) 319 (1994),

pp. 339 344.

79. Multivariable stability margin optimization: a spectral tangential

interpolation approach (with Juan Cockburn), Int. J. Control 63

(1996), pp. 557-590.

80. The structured singular value for linear input/output systems, (with

H. Bercovici and C. Foias), SIAM J. Control and Optimization 34

(1996), pp. 1392 1404.

81. Invariant geometric evolutions of surfaces and volumetric smoothing

(with P. Olver and G. Sapiro), SIAM J. Applied Math. 57 (1997), pp.

176-194.

82. Optical ow: a curve evolution approach (with A. Kumar and G.

Balas), IEEE Trans. Image Processing 5 (1996), pp. 598 611.

83. Conformal curvature ows: from phase transitions to active contours

(with S. Kichenesamy, A. Kumar, P. Olver, and A. Yezzi), Archive for

Rational Mechanics and Analysis 134 (1996), pp. 275 301.

84. The equivalence among the solutions of the H optimal sensitivity

computation problem (with K. Hirata and Y. Yamamoto), Trans. of

the Society of Instrument and Control Engineers 31 (1995), pp. 1954

1961.

85. Three snippets of curve evolution theory in computer vision, Math-

ematical and Computer Modelling Journal 24 (1996), pp. 103 119.

86. On skew Toeplitz operators, II (with H. Bercovici and C. Foias),

Operator Theory: Advances and Applications 103 (1997).

87. Behavioral analysis of anisotropic di usion in image processing (with

Y. You, M. Kaveh, W. Xu), IEEE Trans. Image Processing 5 (1996),

pp. 1539 1553.

88. A ne geometry, curve ows and invariant numerical approximations

(with E. Calabi and P. Olver), Advances in Mathematics 124 (1996),

pp. 154 196.

89. New solution to the two block H problem for in nite dimensional

stable plants (with K. Hirata, Y. Yamamoto, T. Katayama), Trans.

of the Society of Instrument and Control Engineers 32 (1996), pp.

1416 1424.

90. A ne invariant detection: edge maps, anisotropic di usion, and ac-

tive contours (with P. Olver and G. Sapiro), Acta Math. Appl. 59

(1999), pp. 45-77.

91. Geometric active contours for segmentation of medical imagery, (with

S. Kichenesamy, A. Kumar, P. Olver, and A. Yezzi), IEEE Trans.

Medical Imaging 16 (1997), pp. 199 209.

92. Di erential and numerically invariant signature curves applied to ob-

ject recognition (with E. Calabi, P. Olver, C. Shakiban), International

Journal of Computer Vision 26 (1998), pp. 107-135.

93. Some remarks on Hamiltonians and the in nite-dimensional one block

H problem (with K. Hirata and Y. Yamamoto), Systems and Con-

trol Letters 29 (1996), pp. 111-117.

94. Area and length minimizing ows for segmentation (with Y. Lauziere,

K. Siddiqi, and S. Zucker), IEEE Trans. Image Processing 7 (1998),

pp. 433-444.

95. Introduction to special issue of IEEE Trans. Image Processing on

partial di erential equation methods in image processing (with V.

Caselles, J. M. Morel, and G. Sapiro), IEEE Trans. Image Processing

7 (1998), pp. 269-274.

96. Shapes, shocks, and wiggles (with K. Siddiqi, B. Kimia, and S.

Zucker), Journal of Image and Vision Computing 17 (1999), pp. 365

373.

97. The legacy of George Zames (with S. Mitter), IEEE Trans. Aut.

Control 43 (1998), pp. 590-595.

98. Curve evolution models for real-time identi cation with application

to plasma etching (with J. Berg and A. Yezzi), IEEE Trans. Aut.

Control 44 (1999), pp. 99-104.

99. Skew Toeplitz solution to the H problem for in nite dimensional

unstable plants (with K. Hirata, Y. Yamamoto, and T. Katayama),

Trans. of the Society of Instrument and Control Engineers 33 (1997),

pp. 1066-1071.

100. On the a ne invariant heat equation for nonconvex curves (with

S. Angenent and G. Sapiro), Journal of the American Mathematical

Society 11 (1998), pp. 601-634.

101. On the psychophysics of the shape triangle (with B. Kimia, K. Sid-

diqi, and S. Zucker), Vision Research 41 (2001), pp. 1153-1178.

102. Computation of the singular values of Toeplitz operators and the

gap metric (with K. Hirata and Y. Yamamoto), Systems and Control

Letters 36 (1999), pp. 327-338.

103. A Hamiltonian-based solution to the two-block H problem for gen-

eral plants in H and rational weights (with K. Hirata and Y. Ya-

mamoto), Systems and Control Letters 40 (2000), pp. 83-95.

104. Knowledge-based segmentation of SAR data with learned priors

(with S. Haker and G. Sapiro), IEEE Trans. Image Processing 9

(2000), pp. 298-302.

105. Laplace-Beltrami operator and brain surface attening (with S. An-

genent, S. Haker, and R. Kikinis) IEEE Trans. on Medical Imaging

18 (1999), pp. 700-711.

106. On the computation of switching surfaces in optimal control: A

Groebner basis approach (with U. Walther and T. Georgiou), IEEE

Trans. Aut. Control 46 (2001), pp. 534-541.

107. Conformal surface parametrization for texture mappings (with S.

Angenent, S. Haker, M. Halle, R. Kikinis), IEEE Trans. on Visual-

ization and Computer Graphics 6 (2000), pp. 181-190.

108. On the psychophysics of the shape triangle (with B. Kimia, K. Sid-

diqi, and S. Zucker), Vision Research 41 (2001), pp. 1153-1178.

109. Conformal surface parametrization for texture mappings (with S.

Angenent, S. Haker, M. Halle, R. Kikinis), IEEE Trans. on Visual-

ization and Computer Graphics 6 (2000), pp. 181-190.

110. Nondistorting attening maps and the 3D visualization of colon CT

images, (with S. Angenent, S. Haker, R. Kikinis), IEEE Trans. of

Medical Imaging 19 (2000), pp. 665-671.

111. On the computation of a ne skeletons of planar curves and the de-

tection of skew symmetry (with S. Belelu, B. Giblin, and G. Sapiro),

Pattern Recognition 34 (2001), pp. 943-952.

112. Eye tracking: A challenge for robust control, Journal of Nonlinear

and Robust Control 10 (2000), pp. 875-888.

113. Hamilton-Jacobi skeletons (with K. Siddiqi, S. Bouix, and S. Zucker),

Int. Journal Computer Vision 48 (2002), pp. 215-231.

114. Imaging techniques for 3D foams (with C. Macosko and M. Mont-

miny), Journal of Cellular Plastics 37 (2001).

115. Optimal mass transport for registration and warping (with S. Haker

and L. Zhu), Int. Journal Computer Vision 60 (2004), pp. 225-240.

116. Stochastic approximations of curve shortening ows (with G. Ben

Arous and O. Zeitouni), Journal of Di erential Equations 195 (2003),

pp. 119-142.

117. Minimizing ows for the Monge-Kantorovich problem (with S. An-

genent and S. Haker), SIAM J. Math. Analysis 35 (2003) pp. 61-97.

118. Automated identi cation of RNA conformational motifs: theory and

application to the HM LSU 23S rRNA (with E. Tannenbaum, E.

Herschkowitz, S. Howerton, and L. Williams), Nucleic Acids Research

31 (2003), pp. 1-9.

119. Visual search automation for unmanned aerial vehicles, (with E.

Johnson, A. Proctor, and Jincheol Ha), IEEE Trans. on Aerospace

and Electronic Systems 41 (2005), pp. 219-232.

120. Flattening maps for the visualization of multi-branched vessels (with

S. Haker and L. Zhu), IEEE Trans. Medical Imaging 24 (2005), pp.

191-198.

121. Statistically based ow for image segmentation (with E. Pichon and

R. Kikinis), Medical Image Analysis 8 (2004), pp. 267-274.

122. The 3D structure of real polymer foams (with M. Montminy and

C. Macosko), Journal of Colloidal and Interfacial Science 280 (2004),

pp. 202-211.

123. Area-based medial axis of planar curves, (with S. Betelu, M. Ni-

ethammer, and G. Sapiro), Int. Journal Computer Vision 60 (2004),

203-224.

124. Flux driven automatic centerline extraction (with S. Bouix and K.

Siddiqi), Medical Image Analysis 9 (2005), 209-221.

125. Statistical analysis of RNA backbone (with E. Hershkowitz, G. Sapiro,

and L. Williams), IEEE Trans. Computational Biology and Bioinfor-

matics 3 (2006).

126. Dynamic active contours for visual tracking (with S. Angenent and

M. Niethammer), IEEE Trans. Automatic Control 51 (2006), pp. 562-

579.

127. On the evolution of closed curves by means of vector distance func-

tions (with M. Niethammer and P. Vela), Int. Journal Computer

Vision 65 (2005), pp. 5-27.

128. Detecting simple points in higher dimensions (with M. Niethammer,

W. Kalies, and K. Mischaikow), IEEE Image Processing 15 (2006), pp.

2462- 2469.

129. Development and testing of highly autonomous unmanned aerial ve-

hicles (with J. Ha, E. Johnson, and A. Proctor), AIAA Journal of

Aerospace Computing, Information, and Communication 1 (2004), No.

12, pp. 485-501.

130. Automatic recognition of electronic components (with G. Pryor and

A. Goldstein), Circuits Assembly 15 (2004), pp. 36-40.

131. Mathematical methods in medical imaging (with S. Angenent and

E. Pichon), Bull. Amer. Math. Soc. (N.S.) 43 (2006), pp. 365-396.

132. Despeckling of medical ultrasound images (with O. Michailovich),

IEEE Trans. on Ultrasonics, Ferroelectrics, and Frequency Control 53

(2006), pp. 64-79.

133. A method for prediction and estimation of large-amplitude optical

ows - an extended Kalman ltering approach (with O. Michailovich),

Engineering Computations 23 (2006), pp. 503-514.

134. Single nucleotide RNA choreography (with C. Hsiao, S. Mohan,

E. Hershkovitz, L. Williams), Nucleic Acids Research 34 (2006), pp.

1481-1491.

135. Coronary vessel cores from 3D imagery: a topological approach

(with A. Szymczak, A. Stillman, K. Mischaikow), Medical Image Anal-

ysis 10(4) (2006), pp. 548-559.

136. A generic framework for tracking using particle lter with dynamic

shape prior (with Y. Rathi), IEEE Trans. Image Processing 16

(2007), pp. 1370-1382.

137. Multiscale 3D shape representation and segmentation using spherical

wavelets (with D. Nain, S. Haker, A. Bobick), IEEE Trans. Medical

Imaging 26 (2007), pp. 598-618.

138. Tracking deforming objects using particle ltering for geometric ac-

tive contours (with Y. Rathi, N. Vaswani, A. Yezzi), IEEE PAMI 29

(2007), pp. 1470-1475.

139. An image morphing technique based on optimal mass preserving map-

ping (with L. Zhu, Y. Yang, and S. Haker), IEEE Trans. Image

Processing 16 (2007), pp. 1481-1495.

140. Distribution metrics and image segmentation (with T. Georgiou, J.

Malcolm, O. Michailovich, Y. Rathi), Linear Algebra and Its Applica-

tions 425 (2007), pp. 663672.

141. Polymer adsorption on curved surfaces: a geometric approach (with

E. Hershkowitz and R. Tannenbaum), Journal of Physical Chemistry

B 111 (2007), pp. 123**-*****.

142. Image segmentation using active contours driven by the Bhattacharyya

gradient ow (with O. Michailovich, Y. Rathi), IEEE Trans. Image

Processing 16 (2007), pp. 2787-2801.

143. Blind deconvolution of medical ultrasound images: parametric in-

verse ltering approach (with O. Michailovich), IEEE Trans. Image

Processing 16 (2007), pp. 3005-3019.

144. Fast approximation of smooth functions from samples of partial deriva-

tives with applications to phase unwrapping (with O. Michailovich),

Signal Processing 88 (2008), pp. 358-374.

145. Finsler active contours (with E. Pichon and J. Melonakos), IEEE

PAMI 30 (2008), pp. 412-423.

146. Geometric observers for dynamically evolving curves (with P. Vela

and M. Niethammer), IEEE PAMI 30 (2008), pp. 1093-1108.

147. Knowledge-based segmentation for tracking through deep turbulence

(with P. Vela, M. Niethammer, G. Pryor, R. Butts, and D. Washburn),

IEEE Trans. Control Technology 16 (2008), pp. 469-475.

148. Scaling aspects of block co-polymer adsorption on curved surfaces

from non-selective solvents (with E. Hershkowitz and R. Tannen-

baum), Journal of Physical Chemistry B, 112(17) (2008), pp. 5317-

5326.

149. Adsorption of block co-polymers from selective solvents on curved

surfaces (with E. Hershkovitz and R. Tannenbaum), Macromolecules

49 (2008), pp. 3190-3198.

150. A framework for image segmentation using shape models and kernel

space shape priors (with S. Dambreville and Y. Rathi), IEEE PAMI

30 (2008), pp. 1385-1399.

151. Dynamic denoising of tracking sequences (with O. Michailovich and

Y. Rathi), IEEE Trans. Image Processing 17 (2008), pp. 847-857.

152. Segmentation of tracking sequences using dynamically updated adap-

tive learning (with O. Michailovich), IEEE Trans. on Image Process-

ing 17 (2008), pp. 2403-2413.

153. Localizing region-based active contours (with S. Lankton), IEEE

Trans. Image Processing 17 (2008), pp. 2029-2039.

154. Choice of in vivo versus idealized velocity boundary conditions in-

uences the ow eld in subject-speci c models of the human carotid

bifurcation (with A. Wake, D. Giddens, J. Oshinsky), Journal of

Biomedical Engineering 131 (2009).

155. Real-time visual tracking using geometric active contours and parti-

cle lters (with Jincheol Ha and E. Johnson), Journal of American

Institute of Aeronautics and Astronautics 5(10) (2008), pp. 361-379.

156. Vision-based range regulation of a leader-follower formation (with

P. Vela, A. Betser, J. Malcolm), IEEE Trans. Control Technology 17

(2009), pp. 442-449.

157. Near tubular ber bundle segmentation for di usion weighted imag-

ing: segmentation through frame reorientation (with M. Niethammer

and C. Zach), NeuroImage 45 (2009), pp. 123-132.

158. ACL reconstruction in the skeletally immature: an anatomic study

utilizing 3-D MRI reconstructions (with J. Kercher, J. Xerogeanes,

R. Al-Hakim, J. Zhao, J. Black, J. Greene), Journal of Pediatric Or-

thopaedics 29 (2009), pp. 124-130.

159. Adsorption of poly(methyl methacrylate) on concave Al2O3 surfaces

in nano-porous membranes (with G. Nunnery, E. Hershkovitz, R.

Tannenbaum), Langmuir 25 (2009), pp. 9157-9163.

160. An e cient numerical method for the solution of the L2 optimal mass

transfer problem (with E. Haber and T. Rehmen), SIAM Journal on

Scienti c Computation 32 (2010), pp. 197-211.

161. 3D nonrigid registration via optimal mass transport on the GPU

(with E. Haber, T. Rehman, G. Pryor, and J. Melonakos), MedIA 13

(2009), pp. 931-940.

162. Deform PF-MT (Particle Filter with Mode Tracker) for tracking non-

a ne contour deformations, (with N. Vaswani, Y. Rathi, and A.

Yezzi), IEEE Trans. Image Processing 19 (2010), pp. 841-857.

163. A geometric approach to joint 2D region-based segmentation and

3D pose estimation using a 3D shape prior (with S. Dambreville, R.

Sandhu, A. Yezzi), SIAM Imaging Science 3 (2010), pp. 110-132.

164. Targeting of PbSe-Fe2O3 nanoplatforms by external magnetic eld

under viscous ow conditions, (with Lioz Etgar, Arie Nakhmani,

Efrat Lifshitz, and Rina Tannenbaum), Sensor Lett. 8 (2010), pp.

383-386.

165. Trajectory control of PbSe - F e2 O3 nanoplatforms under viscous

ow and an external magnetic eld (with L. Etgar, A. Nakhmani, E.

Lifshitz, R. Tannenbaum), Nanotechnology 21 (2010), pp. 1-9.

166. Texture mapping via optimal mass transport (with A. Dominitz),

IEEE TVCG 16 (2010), pp. 419-433.

167. Imaging of meningioma progression by matrix-assisted laser desorp-

tion/ionization time-of- ight mass spectrometry (with N. Agar, J.

Malcolm, V. Mohan, H. Yang, M. Johnson, J. Agar, P. Black), Ana-

lytical Chemistry 82 (2010), pp. 2621-2625.

168. A ne registration of label maps in label space (with Y. Rathi, J.

Malcolm, S. Bouix, M. E. Shenton), Journal of Computing 2:4 (2010),

pp. 1 11.

169. Relevance vector machine learning for neonate pain intensity assess-

ment using digital imaging (with B. Gholami and W. Haddad), IEEE

Trans. Biomedical Engineering 57 (2010), pp. 1457-1466.

170. Point set registration via particle ltering and stochastic dynamics,

(with R. Sandhu and S. Dambreville), IEEE PAMI 32 (2010), pp.

1459-1473.

171. A non-rigid kernel based framework for 2D/3D pose estimation and

2D image segmentation (with R. Sandhu and S. Dambreville), IEEE

PAMI 33, pp. 1098-1115.

172. Tubular surface segmentation for extracting anatomical structures

from medical imagery (with V. Mohan and G. Sundaramoorthi),

IEEE Trans. Medical Imaging 29 (2010), pp. 1945-1958.

173. A coupled global registration and segmentation framework with ap-

plication to magnetic resonance prostate imagery (with Y. Gao and

R. Sandhu), IEEE Trans. Medical Imaging 29 (2010), pp. 1781-1794.

174. Non-parametric clustering for studying RNA conformations (with

X. LeFaucheur, E. Hershkovits, R. Tannenbaum), IEEE Trans. Com-

putational Biology and Bioinformatics 8 (2011), pp. 1604-1618.

175. Anisotropic conductivity of magnetic carbon nanotubes embedded in

epoxy matrices (with Il Tae Kim and R. Tannenbaum), Carbon 49

(2011), pp. 54-61.

176. Development of stereotactic mass spectrometry for brain tumor surgery,

(with N. Agar, V. Mohan, A. Golby, F. Jolescz), NeuroSurgery 68

(2011), pp. 280-290.

177. Object tracking and target reacquisition on 3D range data with par-

ticle ltering and online shape learning (with J. Lee and S. Lankton),

IEEE Trans. Image Processing 20 (2011), pp. 2912-2924.

178. Particle ltering with region-based matching for tracking of partially

occluded and scaled targets (with A. Nakhmani), SIAM Journal

Imaging Science 4 (2011), pp. 220-242.

179. Automatic quanti cation of ller dispersion in polymer composites,

(with Zhuo Lia, Yi Gao, Kyoung-Sik Moon, Yagang Yao, C.P. Wong),

Polymer 53:7 (2012), pp. 1571-1580.

180. 3D automatic segmentation of the hippocampus using wavelets with

applications to radiotherapy planning (with Y. Gao, B. Corn, D.

Schifter), MedIA (2012), 16:2, pp. 374-85.

181. Self-crossing detection and location for parametric active contours

(with Arie Nakhmani), IEEE Trans. Image Processing 21:7 (2012),

pp. 3150-3156.

182. Clinical decision support and closed-loop control for cardiopulmonary

management and intensive care unit sedation using expert systems,

(with B. Gholami, W. Haddad, J. Bailey), IEEE Transactions on In-

formation Technology in Biomedicine 20:5 (2012), pp. 1343-1350.

183. Filtering in the di eomorphism group and the registration of point

sets (with Y. Gao, Y. Rathi, and S. Bouix), IEEE Transactions Image

Processing, 2012.

184. Optimal drug dosing control for intensive care unit sedation using

a hybrid deterministic-stochastic pharmacokinetic and pharmacody-

namic model (with Wassim M. Haddad, James M. Bailey, Behnood

Gholami), to appear in Optimal Control, Applications and Methods,

2012.

185. Interactive multi-object segmentation using local robust statistically

driven active contours, (with Y. Gao and R. Kikinis), to appear in

IEEE Trans. Image Processing, 2012.

186. Diagnosis of the properties of CNT composites using medical imaging

analytical techniques (with Y. Gao, L. Zhu, S. Bouix, C.P. Wong),

to appear in ACS Nano, 2012.

187. Particle lters and occlusion handling for rigid 2D-3D pose track-

ing (with J. Lee and R. Sandhu), submitted for publication to SIAM

Journal Imaging Science, 2012.

188. Volumetric mapping of genus 0 volumes via mass preservation (with

A. Dominitz and R. Sandhu), submitted for publication to IEEE Trans.

Visualization and Computer Graphics, 2012.

189. Multimodal deformable image registration via the Bhattacharyya dis-

tance (with Y. Lou), submitted for publication to Neuroimaging,

2012.

190. Generalized image normalized cross-correlation (with Arie Nakhmani),

submitted to Pattern Recognition, 2012.

191. Tracking with adaptive Sobolev snakes (with Arie Nakhmani), sub-

mitted to IEEE Trans. Image Processing, 2012.

192. Sparse texture active contours (with Y. Gao, S. Bouix, and M. Shen-

ton), submitted to IEEE Trans. Image Processing, 2012.

193. Optical ow estimation for re detection in videos (with M. Mueller,

P. Karasev, and I. Kolesov), submitted to IEEE Trans. Image Pro-

cessing, 2012.

194. Probabilistic scale-invariant visual tracking with adaptive template

library update (with A. Nakhmani), submitted to Computer Vision

and Image Understanding, 2012.

195. Brain tumor margin delineation using limited measurements: a com-

pressive sensing approach (with B. Gholami, W. M. Haddad, I. Nor-

ton, S. Santagata, F. A. Jolesz, and N. Y. R. Agar), submitted to

IEEE Trans. on Biomedical Engineering, 2012.

196. Multi-atlas segmentation, a Kalman ltering perspective (with Y.

Gao, L. Zhu, and S. Bioux), submitted to IEEE Transactions on Pat-

tern Analysis and Machine Intelligence, 2012.

197. Automated skin segmentation in ultrasonic evaluation of skin toxicity

in breast-cancer radiotherapy (with Y. Gao and S. Bouix), submitted

to Ultrasound in Medicine and Biology, 2012.

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201. Feedback Control, Uncertainty, and Complexity, edited by Bruce Fran-

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243. On a stochastic model of geometric snakes (with D. Nain, G. Unal,

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249. Complexes of nucleic acids with group I and II cations (with C.

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250. On the computation of optimal transport maps using gradient ows

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volume 398, Springer-Verlag, 2010, pp. 321-331.

254. 3D automatic segmentation of the hippocampus using wavelets with

applications to radiotherapy planning, in Brain, Body and Machine,

pages 17-32, edited by Jorge Angeles, Benoit Boulet, James J. Clark,

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255. Optimal mass transport for problems in control, statistical estima-

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